Plot FigR Network — plotfigRNetwork • FigR

Network visualization of TF-DORC associations based on the regulation scores inferred by FigR

Usage

plotfigRNetwork(
  figR.d,
  score.cut = 1,
  DORCs = NULL,
  TFs = NULL,
  weight.edges = FALSE
)

figR.d: data.frame of results returned by runFigRGRN)
score.cut: numeric specifying the absolute regulation score to threshold TF-DORC connections on. Default is 1
DORCs: character specifying valid DORC gene symbols to subset heatmap to. Default is NULL (no subsetting)
TFs: character specifying valid TF gene symbols to subset heatmap to. Default is NULL (no subsetting)
weight.edge: boolean specifying whether or not to weight edges by FigR regulation score. Default is FALSE

a network plot of the resulting filtered TF-DORC associations

Vinay Kartha